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312 scholarly results for stat.OT
Scholar iON Academic Synthesis
The selected scholarly papers encompass a diverse array of scientific inquiries, from medical imaging techniques to climate science and statistical physics. The study by Zaiss et al. (2013) introduces an advanced correction algorithm for chemical exchange saturation transfer (CEST) MRI, enhancing the accuracy of pH-weighted imaging in medical diagnostics, particularly for acute stroke, by mitigating interference effects such as spillover and magnetization transfer. Najnudel et al. (2023) propose a novel framework linking microscopic particle interactions in equilibrium statistical physics to macroscopic port-Hamiltonian systems, offering an innovative approach to modeling energy and matter dynamics under experimental constraints. Olla (2002) delves into particle transport in turbulent flows, providing insights into diffusion and concentration fluctuations, with implications for understanding particle behavior in complex fluid systems. The IPCC report (2023) synthesizes the physical science basis of climate change, highlighting human influence, future projections, and mitigation strategies, serving as a critical resource for policymakers addressing global climate challenges. Collectively, these studies demonstrate significant advancements in methodological approaches across disciplines, emphasizing the importance of accurate modeling and analysis in both applied and theoretical contexts.
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arxiv.org · scholarly article
Inverse Z-spectrum analysis for MT- and spillover-corrected and T1-compensated steady-state pulsed CEST-MRI - application to pH-weighted MRI of acute stroke
Moritz Zaiss; Junzhong Xu; Steffen Goerke; Imad S. Khan; Robert J. Singer; John C. Gore; Daniel F. Gochberg; Peter Bachert
2013 arXiv Open Access
Endogenous chemical exchange saturation transfer (CEST) effects are always diluted by competing effects such as direct water proton saturation (spillover) and macromolecular magnetization transfer (MT). This leads to T2-and MT-shine-through effects in the actual biochemical contrast of CEST. Therefore, a simple evaluation algorithm which corrects the CEST signal was searched for. By employing a recent eigenspace theory valid for spinlock and continuous wave (cw) CEST we predict that the inverse Z-spectrum is beneficial to Z-spectrum itself. Based on this we propose a new spillover- and MT-corrected magnetization transfer ratio (MTRRex) yielding Rex, the exchange dependent relaxation rate in the rotating frame. For verification, the amine proton exchange of creatine in solutions with different agar concentration was studied experimentally at clinical field strength of 3T. In contrast to the compared standard evaluation for pulsed CEST experiments, MTRasym, our approach shows no T2 or MT shine through effect. We demonstrate that spillover can be corrected properly and also quantitative evaluation of pH and creatine concentration is possible which proves MTRRex as quantitative CEST-MRI method. A spillover correction is of special interest for clinical static field strengths and protons resonating near the water peak. This is the case for -OH-CEST effects like gagCEST or glucoCEST, but also amine exchange of creatine or glutamate which require high B1. Although, only showed for amine exchange, we propose our normalization to work generally for DIACEST, PARACEST in slow- and fast exchange regime not just as a correction, but also for quantitative CEST-MRI. Applied to acute stroke induced in rat brain, the corrected CEST signal shows significantly higher contrast between stroke area and normal tissue as well as less B1 dependency compared to conventional approaches.
arxiv.org · scholarly article
From equilibrium statistical physics under experimental constraints to macroscopic port-Hamiltonian systems
Judy Najnudel; Thomas Hélie; David Roze; Rémy Muller
2023 arXiv Open Access
This paper proposes to build a bridge between microscopic descriptions of matter with internal energy, composed of many fast interacting particles inside an environment, and their port-Hamiltonian (PH) descriptions at macroscopic scale. The environment, assumed to be slow, is modeled through experimental constraints on macroscopic quantities (e.g. energy, particle number, etc), with a partitioning into two classes: non fluctuating and fluctuating values. The method to derive the PH macroscopic laws is detailed in several steps and illustrated on two standard cases (ideal gas, Ising ferromagnets). It revisits equilibrium statistical physics with a focus on this partitioning. First, the Boltzmann's principle is used to provide the statistic law of the matter. It defines a macroscopic equilibrium characterized by a scalar value, the entropy, together with thermodynamic quantities emerging from each constraint. Then, the port-Hamiltonian system is derived. The Hamiltonian (macroscopic energy) is derived as a function of the macroscopic state (entropy and the macroscopic quantities associated with the fluctuating class). The ports (flows/efforts) are related to the time-derivative of the state and the Hamiltonian gradient in a conservative way. This open system defines the reversible laws that govern standard thermodynamic quantities. Lastly, this paper presents a strategy to extend this PH system to an irreversible conservative one, given a macroscopic dissipative law.
arxiv.org · scholarly article
Particle transport in a random velocity field with Lagrangian statistics
Piero Olla
2002 arXiv Open Access DOI: 10.1103/PhysRevE.66.056304
The transport properties of a random velocity field with Kolmogorov spectrum and time correlations defined along Lagrangian trajectories are analyzed. The analysis is carried on in the limit of short correlation times, as a perturbation theory in the ratio, scale by scale, of the eddy decay and turn-over time. Various quantities such as the Batchelor constant and the dimensionless constants entering the expression for particle relative and self-diffusion are given in terms of this ratio and of the Kolmogorov constant. Particular attention is paid to particles with finite inertia. The self-diffusion properties of a particle with Stokes time longer than the Kolmogorov time are determined, verifying on an analytical example the dimensional results of [nlin.CD/0103018]. Expressions for the fluid velocity Lagrangian correlations and correlation times along a solid particle trajectory, are provided in several parameter regimes, including the infinite Stokes time limit corresponding to Eulerian correlations. The concentration fluctuation spectrum and the non-ergodic properties of a suspension of heavy particles in a turbulent flow, in the same regime, are analyzed. The concentration spectrum is predicted to obey, above the scale of eddies with lifetime equal to the Stokes time, a power law with universal -4/3 exponent, and to be otherwise independent of the nature of the turbulent flow. A preference of the solid particle to lie in less energetic regions of the flow is observed.
semanticscholar.org · scholarly article
Climate Change 2021 – The Physical Science Basis
Intergovernmental Panel on Climate Change
2023 📖 Cited 12,740 times Open Access DOI: 10.1017/9781009157896
The Working Group I contribution to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change (IPCC) provides a comprehensive assessment of the physical science basis of climate change. It considers in situ and remote observations; paleoclimate information; understanding of climate drivers and physical, chemical, and biological processes and feedbacks; global and regional climate modelling; advances in methods of analyses; and insights from climate services. It assesses the current state of the climate; human influence on climate in all regions; future climate change including sea level rise; global warming effects including extremes; climate information for risk assessment and regional adaptation; limiting climate change by reaching net zero carbon dioxide emissions and reducing other greenhouse gas emissions; and benefits for air quality. The report serves policymakers, decision makers, stakeholders, and all interested parties with the latest policy-relevant information on climate change. Available as Open Access on Cambridge Core.
semanticscholar.org · scholarly article
GPQA: A Graduate-Level Google-Proof Q&A Benchmark
David Rein; Betty Li Hou; Asa Cooper Stickland; Jackson Petty; Richard Yuanzhe Pang; Julien Dirani; Julian Michael; Samuel R. Bowman
2023 arXiv.org 📖 Cited 2,718 times
We present GPQA, a challenging dataset of 448 multiple-choice questions written by domain experts in biology, physics, and chemistry. We ensure that the questions are high-quality and extremely difficult: experts who have or are pursuing PhDs in the corresponding domains reach 65% accuracy (74% when discounting clear mistakes the experts identified in retrospect), while highly skilled non-expert validators only reach 34% accuracy, despite spending on average over 30 minutes with unrestricted access to the web (i.e., the questions are"Google-proof"). The questions are also difficult for state-of-the-art AI systems, with our strongest GPT-4 based baseline achieving 39% accuracy. If we are to use future AI systems to help us answer very hard questions, for example, when developing new scientific knowledge, we need to develop scalable oversight methods that enable humans to supervise their outputs, which may be difficult even if the supervisors are themselves skilled and knowledgeable. The difficulty of GPQA both for skilled non-experts and frontier AI systems should enable realistic scalable oversight experiments, which we hope can help devise ways for human experts to reliably get truthful information from AI systems that surpass human capabilities.
semanticscholar.org · scholarly article
CRISPR-Cas12–based detection of SARS-CoV-2
James P. Broughton; Xianding Deng; Guixia Yu; C. Fasching; V. Servellita; J. Singh; X. Miao; J. Streithorst; A. Granados; A. Sotomayor-González; K. Zorn; Allan Gopez; Elaine D. Hsu; W. Gu; Steve Miller; C. Pan; H. Guevara; D. Wadford; Janice S. Chen; C. Chiu
2020 Nature Biotechnology 📖 Cited 2,194 times Open Access DOI: 10.1038/s41587-020-0513-4
An outbreak of betacoronavirus severe acute respiratory syndrome (SARS)-CoV-2 began in Wuhan, China in December 2019. COVID-19, the disease associated with SARS-CoV-2 infection, rapidly spread to produce a global pandemic. We report development of a rapid (<40 min), easy-to-implement and accurate CRISPR–Cas12-based lateral flow assay for detection of SARS-CoV-2 from respiratory swab RNA extracts. We validated our method using contrived reference samples and clinical samples from patients in the United States, including 36 patients with COVID-19 infection and 42 patients with other viral respiratory infections. Our CRISPR-based DETECTR assay provides a visual and faster alternative to the US Centers for Disease Control and Prevention SARS-CoV-2 real-time RT–PCR assay, with 95% positive predictive agreement and 100% negative predictive agreement. SARS-CoV-2 in patient samples is detected in under an hour using a CRISPR-based lateral flow assay.
semanticscholar.org · scholarly article
Future Physics Programme of BESIII
M. Ablikim; M. Achasov; P. Adlarson; S. Ahmed; M. Albrecht; M. Alekseev; A. Amoroso; F. An; Q. An; Y. Bai; O. Bakina; R. Ferroli; Y. Ban; K. Begzsuren; J. Bennett; N. Berger; M. Bertani; D. Bettoni; F. Bianchi; J. Biernat; J. Bloms; I. Boyko; R. Briere; L. Calibbi; H. Cai; X. Cai; A. Calcaterra; G. Cao; N. Cao; S. Cetin; J. Chai; J. Chang; W. Chang; J. Charles; G. Chelkov; Chen; G. Chen; H. Chen; J. Chen; M. Chen; S. Chen; Y. Chen; H. Y. Cheng; W. Cheng; G. Cibinetto; F. Cossio; X. Cui; H. Dai; J. Dai; X. D
2019 Chinese Physics C, High Energy Physics & Nuclear Physics 📖 Cited 480 times Open Access DOI: 10.1088/1674-1137/44/4/040001
There has recently been a dramatic renewal of interest in hadron spectroscopy and charm physics. This renaissance has been driven in part by the discovery of a plethora of charmonium-like XYZ states at BESIII and B factories, and the observation of an intriguing proton-antiproton threshold enhancement and the possibly related X(1835) meson state at BESIII, as well as the threshold measurements of charm mesons and charm baryons. We present a detailed survey of the important topics in tau-charm physics and hadron physics that can be further explored at BESIII during the remaining operation period of BEPCII. This survey will help in the optimization of the data-taking plan over the coming years, and provides physics motivation for the possible upgrade of BEPCII to higher luminosity.
semanticscholar.org · scholarly article
Past, present, and future of CRISPR genome editing technologies.
Martin Pacesa; O. Pelea; M. Jinek
2024 Cell 📖 Cited 417 times Open Access DOI: 10.1016/j.cell.2024.01.042
Genome editing has been a transformative force in the life sciences and human medicine, offering unprecedented opportunities to dissect complex biological processes and treat the underlying causes of many genetic diseases. CRISPR-based technologies, with their remarkable efficiency and easy programmability, stand at the forefront of this revolution. In this Review, we discuss the current state of CRISPR gene editing technologies in both research and therapy, highlighting limitations that constrain them and the technological innovations that have been developed in recent years to address them. Additionally, we examine and summarize the current landscape of gene editing applications in the context of human health and therapeutics. Finally, we outline potential future developments that could shape gene editing technologies and their applications in the coming years.
semanticscholar.org · scholarly article
Pressure-induced superconductivity in topological parent compound Bi2Te3
J. Zhang; S. J. Zhang; H. Weng; Wei Zhang; Li Yang; Q. Liu; S. Feng; X. -. Wang; R. Yu; Lipeng Cao; Lin Wang; Wenge Yang; H. Z. Liu; W. Y. Zhao; Shou-Cheng Zhang; X. Dai; Z. Fang; C. Jin
2010 Proceedings of the National Academy of Sciences of the United States of America 📖 Cited 269 times Open Access DOI: 10.1073/pnas.1014085108
We report a successful observation of pressure-induced superconductivity in a topological compound Bi2Te3 with Tc of ∼3 K between 3 to 6 GPa. The combined high-pressure structure investigations with synchrotron radiation indicated that the superconductivity occurred at the ambient phase without crystal structure phase transition. The Hall effects measurements indicated the hole-type carrier in the pressure-induced superconducting Bi2Te3 single crystal. Consequently, the first-principles calculations based on the structural data obtained by the Rietveld refinement of X-ray diffraction patterns at high pressure showed that the electronic structure under pressure remained topologically nontrivial. The results suggested that topological superconductivity can be realized in Bi2Te3 due to the proximity effect between superconducting bulk states and Dirac-type surface states. We also discuss the possibility that the bulk state could be a topological superconductor.
semanticscholar.org · scholarly article
pH‐responsive polymers for drug delivery: Trends and opportunities
J. Singh; P. Nayak
2023 Journal of Polymer Science 📖 Cited 213 times Open Access DOI: 10.1002/pol.20230403
Polymer science has applications in biomedical engineering, prosthetics, surgical implants, and prospective pharmaceutical excipients for drug delivery. “Intelligent or Smart Polymers” are created for drug targeting either by derivatization of natural polymers or controlled radical polymerization of electrolytes. Their mode of action is governed by the environmental stimuli viz. temperature, pH, ionic concentration, magnetism, and so on. pH‐responsive polymers, because of their self‐assembling behavior, alter their solubility, conformation, surface activity, and hydrophilicity when exposed to a specific pH. The physiological pH varies from acidic nuclei to alkaline cytoplasm and highly acidic gastric juice to slightly alkaline plasma; thus, various polymers are under study for delivering small molecules, genes, peptides, enzymes, growth factors, and antibodies. The non‐invasive drug delivery routes like oral, ocular, nasal, pulmonary, transdermal, and rectal routes can be explored for targeting recombinant proteins, monoclonal antibodies, and small molecules with particular emphasis on the individual's physiological and pathological state. Further, these polymers can be designed into various architectures like dendrimers, liposomes, micelles, and metallic nanoparticles that can serve as drug reservoirs for sustaining drug release. The challenges in this field are the selection of biocompatible polymers with ease of synthesis and scale‐up, ensuring effective drug‐loading, and stability aspects, producing robust pharmacological data, and timely regulatory approvals. This review exclusively explores the physicochemical characteristics of pH‐responsive polymers, their categorization, various architectural entities, recent studies and patents, and their emerging applications concerning specific diseases.