Scholar iON
Academic Synthesis
This body of research collectively underscores the multifaceted approaches and challenges in addressing climate change and related health risks through advanced modeling techniques. GonzΓ‘lez-Abad and BaΓ±o-Medina's work emphasizes the potential of deep ensembles to improve uncertainty quantification in climate models, which is crucial for effective planning against extreme weather events. Karagiannakis et al. focus on the resilience of power grid infrastructure, highlighting the need for robust fragility models to inform adaptation strategies against increasing climate-related hazards. Hamwey's exploratory study suggests terrestrial albedo enhancement as a potential, albeit preliminary, climate mitigation strategy. Meanwhile, Bourdon et al. critically reanalyze the FDA's assessment of Moderna's COVID vaccine, pointing to nuanced benefit-risk dynamics, particularly concerning myocarditis risks in young males. Collectively, these studies highlight the importance of precise modeling and risk assessment in developing informed strategies for climate change mitigation and public health safety.
Recently, deep learning has emerged as a promising tool for statistical downscaling, the set of methods for generating high-resolution climate fields from coarse low-resolution variables. Nevertheless, their ability to generalize to climate change conditions remains questionable, mainly due to the stationarity assumption. We propose deep ensembles as a simple method to improve the uncertainty quantification of statistical downscaling models. By better capturing uncertainty, statistical downscaling models allow for superior planning against extreme weather events, a source of various negative social and economic impacts. Since no observational future data exists, we rely on a pseudo reality experiment to assess the suitability of deep ensembles for quantifying the uncertainty of climate change projections. Deep ensembles allow for a better risk assessment, highly demanded by sectoral applications to tackle climate change.
The resilience of electric power grids is threatened by natural hazards. Climate-related hazards are becoming more frequent and intense due to climate change. Statistical analyses clearly demonstrate a rise in the number of incidents (power failures) and their consequences in recent years. Therefore, it is of utmost importance to understand and quantify the resilience of the infrastructure to external stressors, which is essential for developing efficient climate change adaptation strategies. To accomplish this, robust fragility and other vulnerability models are necessary. These models are employed to assess the level of asset damage and to quantify losses for given hazard intensity measures. In this context, a comprehensive literature review is carried out to shed light on existing fragility models specific to the transmission network, distribution network, and substations. The review is organized into three main sections: damage assessment, fragility curves, and recommendations for climate change adaptation. The first section provides a comprehensive review of past incidents, their causes, and failure modes. The second section reviews analytical and empirical fragility models, emphasizing the need for further research on compound and non-compound hazards, especially windstorms, floods, lightning, and wildfires. Finally, the third section examines risk mitigation and adaptation strategies in the context of climate change. This review aims to improve the understanding of approaches to enhance the resilience of power grid assets in the face of climate change. These insights are valuable to various stakeholders, including risk analysts and policymakers, who are involved in risk modeling and developing adaptation strategies.
This study explores the potential to enhance the reflectance of solar insolation by the human settlement and grassland components of the Earth's terrestrial surface as a climate change mitigation measure. Preliminary estimates derived using a static radiative transfer model indicate that such efforts could amplify the planetary albedo enough to offset the current global annual average level of radiative forcing caused by anthropogenic greenhouse gases by as much as 30 percent or 0.76 W/m2. Terrestrial albedo amplification may thus extend, by about 25 years, the time available to advance the development and use of low-emission energy conversion technologies which ultimately remain essential to mitigate long-term climate change. However, additional study is needed to confirm the estimates reported here and to assess the economic and environmental impacts of active land-surface albedo amplification as a climate change mitigation measure.
The United States Food and Drug Administration (FDA) conducted a benefit-risk assessment for Moderna's COVID vaccine mRNA-1273 prior to its full approval, announced 1/31/2022. The FDA's assessment focused on males of ages 18-64 years because the agency's risk analysis was limited to vaccine-attributable myocarditis/pericarditis (VAM/P) given the excess risk among males. The FDA's analysis concluded that vaccine benefits clearly outweighed risks, even for 18-25-year-old males (those at highest VAM/P risk). We reanalyze the FDA's benefit-risk assessment using information available through the third week of January 2022 and focusing on 18-25-year-old males. We use the FDA's framework but extend its model by accounting for protection derived from prior COVID infection, finer age-stratification in COVID-hospitalization rates, and incidental hospitalizations (those of patients who test positive for COVID but are being treated for something else). We also use more realistic projections of Omicron-infection rates and more accurate rates of VAM/P. With hospitalizations as the principal endpoint of the analysis (those prevented by vaccination vs. those caused by VAM/P), our model finds vaccine risks outweighed benefits for 18-25-year-old males, except in scenarios projecting implausibly high Omicron-infection prevalence. Our assessment suggests that mRNA-1273 vaccination of 18-25-year-old males generated between 8% and 52% more hospitalizations from vaccine-attributable myocarditis/pericarditis alone compared to COVID hospitalizations prevented (over a five-month period of vaccine protection assumed by the FDA). The preceding assessment derives from model inputs based on data available at the time of the FDA's mRNA-1273 assessment. Moreover, these inputs as well as model outputs are validated by subsequently available data.
mRNA-based vaccines have become a major focus in the pharmaceutical industry. The coding sequence as well as the Untranslated Regions (UTRs) of an mRNA can strongly influence translation efficiency, stability, degradation, and other factors that collectively determine a vaccine's effectiveness. However, optimizing mRNA sequences for those properties remains a complex challenge. Existing deep learning models often focus solely on coding region optimization, overlooking the UTRs. We present Helix-mRNA, a structured state-space-based and attention hybrid model to address these challenges. In addition to a first pre-training, a second pre-training stage allows us to specialise the model with high-quality data. We employ single nucleotide tokenization of mRNA sequences with codon separation, ensuring prior biological and structural information from the original mRNA sequence is not lost. Our model, Helix-mRNA, outperforms existing methods in analysing both UTRs and coding region properties. It can process sequences 6x longer than current approaches while using only 10% of the parameters of existing foundation models. Its predictive capabilities extend to all mRNA regions. We open-source the model (https://github.com/helicalAI/helical) and model weights (https://huggingface.co/helical-ai/helix-mRNA).
Regulation of mRNA decay is a critical component of global cellular adaptation to changing environments. The corresponding changes in mRNA lifetimes can be coordinated with changes in mRNA transcription rates to fine-tune gene expression. Current approaches for measuring mRNA lifetimes can give rise to secondary effects due to transcription inhibition and require separate experiments to estimate changes in mRNA transcription rates. Here, we propose an approach for simultaneous determination of changes in mRNA transcription rate and lifetime using regulatory small RNAs to control mRNA decay. We analyze a stochastic model for coupled degradation of mRNAs and sRNAs and derive exact results connecting RNA lifetimes and transcription rates to mean abundances. The results obtained show how steady-state measurements of RNA levels can be used to analyze factors and processes regulating changes in mRNA transcription and decay.
Over the past 150 years, vaccines have revolutionized the relationship between people and disease. During the COVID-19 pandemic, technologies such as mRNA vaccines have received attention due to their novelty and successes. However, more traditional vaccine development platforms have also yielded important tools in the worldwide fight against the SARS-CoV-2 virus. A variety of approaches have been used to develop COVID-19 vaccines that are now authorized for use in countries around the world. In this review, we highlight strategies that focus on the viral capsid and outwards, rather than on the nucleic acids inside. These approaches fall into two broad categories: whole-virus vaccines and subunit vaccines. Whole-virus vaccines use the virus itself, either in an inactivated or attenuated state. Subunit vaccines contain instead an isolated, immunogenic component of the virus. Here, we highlight vaccine candidates that apply these approaches against SARS-CoV-2 in different ways. In a companion manuscript, we review the more recent and novel development of nucleic-acid based vaccine technologies. We further consider the role that these COVID-19 vaccine development programs have played in prophylaxis at the global scale. Well-established vaccine technologies have proved especially important to making vaccines accessible in low- and middle-income countries. Vaccine development programs that use established platforms have been undertaken in a much wider range of countries than those using nucleic-acid-based technologies, which have been led by wealthy Western countries. Therefore, these vaccine platforms, though less novel from a biotechnological standpoint, have proven to be extremely important to the management of SARS-CoV-2.
In the last decade, a combination of high sensitivity, high spatial resolution observations and of coordinated multi-wavelength surveys has revolutionized our view of extra-galactic black hole (BH) astrophysics. We now know that supermassive black holes reside in the nuclei of almost every galaxy, grow over cosmological times by accreting matter, interact and merge with each other, and in the process liberate enormous amounts of energy that influence dramatically the evolution of the surrounding gas and stars, providing a powerful self-regulatory mechanism for galaxy formation. The different energetic phenomena associated to growing black holes and Active Galactic Nuclei (AGN), their cosmological evolution and the observational techniques used to unveil them, are the subject of this chapter. In particular, I will focus my attention on the connection between the theory of high-energy astrophysical processes giving rise to the observed emission in AGN, the observable imprints they leave at different wavelengths, and the methods used to uncover them in a statistically robust way. I will show how such a combined effort of theorists and observers have led us to unveil most of the SMBH growth over a large fraction of the age of the Universe, but that nagging uncertainties remain, preventing us from fully understating the exact role of black holes in the complex process of galaxy and large-scale structure formation, assembly and evolution.
In a recent paper hep-th/0008140 by E. Verlinde, an interesting formula has been put forward, which relates the entropy of a conformal formal field in arbitrary dimensions to its total energy and Casimir energy. This formula has been shown to hold for the conformal field theories that have AdS duals in the cases of AdS Schwarzschild black holes and AdS Kerr black holes. In this paper we further check this formula with various black holes with AdS asymptotics. For the hyperbolic AdS black holes, the Cardy-Verlinde formula is found to hold if we choose the ``massless'' black hole as the ground state, but in this case, the Casimir energy is negative. For the AdS Reissner-NordstrΓΆm black holes in arbitrary dimensions and charged black holes in D=5, D=4, and D=7 maximally supersymmetric gauged supergravities, the Cardy-Verlinde formula holds as well, but a proper internal energy which corresponds to the mass of supersymmetric backgrounds must be subtracted from the total energy. It is failed to rewrite the entropy of corresponding conformal field theories in terms of the Cardy-Verlinde formula for the AdS black holes in the Lovelock gravity.
We present Tierkreis, a higher-order dataflow graph program representation and runtime designed for compositional, quantum-classical hybrid algorithms. The design of the system is motivated by the remote nature of quantum computers, the need for hybrid algorithms to involve cloud and distributed computing, and the long-running nature of these algorithms. The graph-based representation reflects how designers reason about and visualise algorithms, and allows automatic parallelism and asynchronicity. A strong, static type system and higher-order semantics allow for high expressivity and compositionality in the program. The flexible runtime protocol enables third-party developers to add functionality using any language or environment. With Tierkreis, quantum software developers can easily build, visualise, verify, test, and debug complex hybrid workflows, and immediately deploy them to the cloud or a custom distributed environment.